Samson Laboratory

Research in the Samson lab is aimed at understanding how cell, tissues, animals and ultimately people respond upon exposure to environmental toxicants in general, and alkylating agents in particular. A wide variety of DNA repair pathways provide protection against DNA alkylation damage and it is now clear that a multitude of other pathways are important for cellular recovery. Our goal is to understand how these pathways function, how they are regulated, and how they integrate to determine the ultimate biological and health consequences of environmental exposures.

In addition to computational and systems biology research, the Samson lab explores the following: molecular mechanisms of spontaneous mutation; the role of DNA alkylation repair in preventing cancer, neurological disease and other hallmarks of aging (using knock out and transgenic mouse models); the application of gene therapy approaches for increasing DNA alkylation repair capacity in normal tissues during cancer chemotherapy.

Alkylating agents represent an abundant class of chemical DNA damaging agent in our environment and they are toxic, mutagenic, teratogenic and carcinogenic. Since we are continuously exposed to alkylating agents, and since certain alkylating agents are used for cancer chemotherapy, it is important to understand exactly how cells respond when exposed to these agents. The repair of DNA alkylation damage provides tremendous protection against the toxic effects of these agents and our aim is to understand the biology, the biochemistry, and the genetics of numerous DNA repair pathways that act upon DNA alkylation damage.

Organisms separated by enormous evolutionary distances employ similar proteins to protect against DNA damage, and we know that bacteria, yeast, and human cells induce the expression of specific sets of genes in response to such damage. Our studies on the response of Escherichia coli, Saccharomyces cerevisiae and human cells to alkylating agents have become intimately intertwined. Much of our previous work was based on the findings that bacterial DNA repair functions can operate in eukaryotic cells, and vice versa, i.e., eukaryotic DNA repair functions can operate in bacterial cells. We exploited this phenomenon to clone a large number of yeast, mouse and human DNA alkylation repair genes, and we are using these cloned genes to gain a thorough understanding of how eukaryotic cells respond to alkylating agents. Moreover, we have extended our alkylation toxicity studies from the cellular level to the whole animal level. Specifically, we have: (i) produced transgenic and knock-out mice with altered DNA repair capabilities and are now measuring their susceptibility to alkylation toxicity; and (ii) transferred DNA alkylation repair genes to bone marrow cells to determine whether such gene therapy could confer a useful level of extra resistance in the bone marrow of chemotherapy patients.